Detailed information of SNP:
|
SNP ID:
sf1124719271(Gbrowse)
Chromosome: chr11 Position: 24719271 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 96.75% | 3.25% |
| All Indica | 796 | 96.73% | 3.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124719271 | G->A | INTERGENIC | None |