Detailed information of SNP:
|
SNP ID:
sf1124737256(Gbrowse)
Chromosome: chr11 Position: 24737256 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.41% | 48.59% |
| All Indica | 797 | 25.47% | 74.53% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 373 | 38.34% | 61.66% |
| Indica II | 213 | 20.19% | 79.81% |
| Indica Intermediate | 211 | 8.06% | 91.94% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124737256 | C->T | LOC_Os11g41900(LOC_Os11g41900.1) | INTRON |