Detailed information of SNP:
|
SNP ID:
sf1124748171(Gbrowse)
Chromosome: chr11 Position: 24748171 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.66% | 43.34% |
| All Indica | 799 | 81.73% | 18.27% |
| All Japonica | 497 | 20.72% | 79.28% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124748171 | G->A | LOC_Os11g41910(LOC_Os11g41910.1) | Synonymous |