Detailed information of SNP:
|
SNP ID:
sf1124750137(Gbrowse)
Chromosome: chr11 Position: 24750137 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 73.54% | 26.46% |
| All Indica | 797 | 59.22% | 40.78% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 68.36% | 31.64% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124750137 | A->G | LOC_Os11g41910(LOC_Os11g41910.1) | INTRON |