Detailed information of SNP:
|
SNP ID:
sf1124755547(Gbrowse)
Chromosome: chr11 Position: 24755547 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.52% | 43.48% |
| All Indica | 799 | 81.73% | 18.27% |
| All Japonica | 497 | 20.32% | 79.68% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124755547 | C->T | LOC_Os11g41920(LOC_Os11g41920.1) | INTRON |