Detailed information of SNP:
|
SNP ID:
sf1124755777(Gbrowse)
Chromosome: chr11 Position: 24755777 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 798 | 48.25% | 51.75% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124755777 | A->G | LOC_Os11g41920(LOC_Os11g41920.1) | INTRON |
| sf1124755777 | A->G | LOC_Os11g41920(LOC_Os11g41920.1) | SNPs that disrupt splice sites |