Detailed information of SNP:
|
SNP ID:
sf1124756645(Gbrowse)
Chromosome: chr11 Position: 24756645 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 60.59% | 39.41% |
| All Indica | 796 | 85.93% | 14.07% |
| All Japonica | 497 | 20.32% | 79.68% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 58.02% | 41.98% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124756645 | A->G | INTERGENIC | None |