Detailed information of SNP:
|
SNP ID:
sf1124758096(Gbrowse)
Chromosome: chr11 Position: 24758096 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.16% | 30.84% |
| All Indica | 798 | 53.51% | 46.49% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 41.18% | 58.82% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124758096 | G->A | INTERGENIC | None |