Detailed information of SNP:
|
SNP ID:
sf1124758993(Gbrowse)
Chromosome: chr11 Position: 24758993 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 57.16% | 42.84% |
| All Indica | 685 | 90.95% | 9.05% |
| All Japonica | 488 | 8.81% | 91.19% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 298 | 88.59% | 11.41% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 177 | 89.27% | 10.73% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 87 | 34.48% | 65.52% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124758993 | A->G | INTERGENIC | None |