Detailed information of SNP:
|
SNP ID:
sf1124759369(Gbrowse)
Chromosome: chr11 Position: 24759369 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 92.17% | 7.83% |
| All Indica | 788 | 91.50% | 8.50% |
| All Japonica | 493 | 93.31% | 6.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 91.58% | 8.42% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 207 | 84.06% | 15.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 67.78% | 32.22% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124759369 | C->T | LOC_Os11g41940(LOC_Os11g41940.1) | INTRON |