Detailed information of SNP:
|
SNP ID:
sf1124762411(Gbrowse)
Chromosome: chr11 Position: 24762411 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.93% | 35.07% |
| All Indica | 798 | 46.62% | 53.38% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 37.87% | 62.13% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 22.38% | 77.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124762411 | C->T | INTERGENIC | None |