Detailed information of SNP:
|
SNP ID:
sf1124764665(Gbrowse)
Chromosome: chr11 Position: 24764665 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 59.90% | 40.10% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 497 | 20.52% | 79.48% |
| Aus | 58 | 60.34% | 39.66% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124764665 | T->C | LOC_Os11g41950(LOC_Os11g41950.1) | Synonymous |