Detailed information of SNP:
|
SNP ID:
sf1124764670(Gbrowse)
Chromosome: chr11 Position: 24764670 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 72.44% | 27.56% |
| All Indica | 794 | 62.85% | 37.15% |
| All Japonica | 496 | 88.91% | 11.09% |
| Aus | 62 | 51.61% | 48.39% |
| Indica I | 372 | 62.63% | 37.37% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124764670 | C->G | LOC_Os11g41950(LOC_Os11g41950.1) | Non-Synonymous SNP |