Detailed information of SNP:
|
SNP ID:
sf1124765096(Gbrowse)
Chromosome: chr11 Position: 24765096 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 67.87% | 32.13% |
| All Indica | 797 | 54.96% | 45.04% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 60 | 53.33% | 46.67% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 211 | 16.11% | 83.89% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124765096 | G->A | INTERGENIC | None |