Detailed information of SNP:
|
SNP ID:
sf1124766164(Gbrowse)
Chromosome: chr11 Position: 24766164 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.90% | 33.10% |
| All Indica | 797 | 51.82% | 48.18% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 373 | 39.14% | 60.86% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124766164 | T->C | LOC_Os11g41960(LOC_Os11g41960.1) | Synonymous |