Detailed information of SNP:
|
SNP ID:
sf1124768068(Gbrowse)
Chromosome: chr11 Position: 24768068 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 71.24% | 28.76% |
| All Indica | 691 | 57.89% | 42.11% |
| All Japonica | 495 | 88.89% | 11.11% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 374 | 61.76% | 38.24% |
| Indica II | 124 | 23.39% | 76.61% |
| Indica Intermediate | 193 | 72.54% | 27.46% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 56.52% | 43.48% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124768068 | G->A | INTERGENIC | None |