Detailed information of SNP:
|
SNP ID:
sf1124772174(Gbrowse)
Chromosome: chr11 Position: 24772174 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 85.96% | 14.04% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124772174 | G->A | INTERGENIC | None |