Detailed information of SNP:
|
SNP ID:
sf1124777545(Gbrowse)
Chromosome: chr11 Position: 24777545 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 61.92% | 38.08% |
| All Indica | 786 | 47.20% | 52.80% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 366 | 58.74% | 41.26% |
| Indica II | 210 | 10.95% | 89.05% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124777545 | C->T | INTERGENIC | None |