Detailed information of SNP:
|
SNP ID:
sf1124777710(Gbrowse)
Chromosome: chr11 Position: 24777710 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.44% | 21.56% |
| All Indica | 799 | 64.83% | 35.17% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 66.13% | 33.87% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124777710 | C->T | INTERGENIC | None |