Detailed information of SNP:
|
SNP ID:
sf1124779378(Gbrowse)
Chromosome: chr11 Position: 24779378 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.46% | 40.54% |
| All Indica | 796 | 37.69% | 62.31% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 211 | 42.65% | 57.35% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124779378 | T->C | INTERGENIC | None |