Detailed information of SNP:
|
SNP ID:
sf1124779468(Gbrowse)
Chromosome: chr11 Position: 24779468 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 65.90% | 34.10% |
| All Indica | 769 | 49.93% | 50.07% |
| All Japonica | 495 | 91.31% | 8.69% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 367 | 47.41% | 52.59% |
| Indica II | 199 | 62.81% | 37.19% |
| Indica Intermediate | 203 | 41.87% | 58.13% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 61.96% | 38.04% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124779468 | C->A | INTERGENIC | None |