Detailed information of SNP:
|
SNP ID:
sf1124783354(Gbrowse)
Chromosome: chr11 Position: 24783354 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 98.94% | 1.06% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 488 | 96.93% | 3.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124783354 | C->T | LOC_Os11g41990(LOC_Os11g41990.2) | Non-Synonymous SNP |
| sf1124783354 | C->T | LOC_Os11g41990(LOC_Os11g41990.1) | Non-Synonymous SNP |