Detailed information of SNP:
|
SNP ID:
sf1124786793(Gbrowse)
Chromosome: chr11 Position: 24786793 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 63.62% | 36.38% |
| All Indica | 798 | 49.75% | 50.25% |
| All Japonica | 495 | 88.28% | 11.72% |
| Aus | 65 | 53.85% | 46.15% |
| Indica I | 375 | 61.60% | 38.40% |
| Indica II | 212 | 12.26% | 87.74% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124786793 | A->G | INTERGENIC | None |