Detailed information of SNP:
|
SNP ID:
sf1124786970(Gbrowse)
Chromosome: chr11 Position: 24786970 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 65.84% | 34.16% |
| All Indica | 795 | 53.33% | 46.67% |
| All Japonica | 494 | 88.66% | 11.34% |
| Aus | 64 | 54.69% | 45.31% |
| Indica I | 374 | 61.76% | 38.24% |
| Indica II | 210 | 22.38% | 77.62% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124786970 | C->T | INTERGENIC | None |