Detailed information of SNP:
|
SNP ID:
sf1124790280(Gbrowse)
Chromosome: chr11 Position: 24790280 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 81.57% | 18.43% |
| All Indica | 796 | 71.48% | 28.52% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 209 | 64.11% | 35.89% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124790280 | G->A | INTERGENIC | None |