Detailed information of SNP:
|
SNP ID:
sf1124790417(Gbrowse)
Chromosome: chr11 Position: 24790417 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 88.20% | 11.80% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 494 | 90.28% | 9.72% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124790417 | A->G | INTERGENIC | None |