Detailed information of SNP:
|
SNP ID:
sf1124790420(Gbrowse)
Chromosome: chr11 Position: 24790420 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 97.25% | 2.75% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124790420 | G->T | INTERGENIC | None |