Detailed information of SNP:
|
SNP ID:
sf1124790637(Gbrowse)
Chromosome: chr11 Position: 24790637 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.11% | 9.89% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124790637 | G->A | INTERGENIC | None |