Detailed information of SNP:
|
SNP ID:
sf1124791344(Gbrowse)
Chromosome: chr11 Position: 24791344 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 76.55% | 23.45% |
| All Indica | 797 | 79.17% | 20.83% |
| All Japonica | 496 | 72.38% | 27.62% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 211 | 51.18% | 48.82% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 76.12% | 23.88% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124791344 | T->A | INTERGENIC | None |