Detailed information of SNP:
|
SNP ID:
sf1124791688(Gbrowse)
Chromosome: chr11 Position: 24791688 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 54.63% | 45.37% |
| All Indica | 795 | 29.31% | 70.69% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 43.28% | 56.72% |
| Indica II | 212 | 19.34% | 80.66% |
| Indica Intermediate | 211 | 14.69% | 85.31% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124791688 | C->A | INTERGENIC | None |