Detailed information of SNP:
|
SNP ID:
sf1124791732(Gbrowse)
Chromosome: chr11 Position: 24791732 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 80.78% | 19.22% |
| All Indica | 798 | 79.45% | 20.55% |
| All Japonica | 496 | 80.44% | 19.56% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 374 | 69.25% | 30.75% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 334 | 74.55% | 25.45% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124791732 | G->A | LOC_Os11g42000(LOC_Os11g42000.1) | UTR_5_PRIME |