Detailed information of SNP:
|
SNP ID:
sf1124793072(Gbrowse)
Chromosome: chr11 Position: 24793072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.20% | 37.80% |
| All Indica | 799 | 51.06% | 48.94% |
| All Japonica | 496 | 78.63% | 21.37% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 44.00% | 56.00% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124793072 | A->G | LOC_Os11g42000(LOC_Os11g42000.1) | INTRON |