Detailed information of SNP:
|
SNP ID:
sf1124793639(Gbrowse)
Chromosome: chr11 Position: 24793639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 71.47% | 28.53% |
| All Indica | 796 | 66.21% | 33.79% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 373 | 44.24% | 55.76% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124793639 | G->A | LOC_Os11g42000(LOC_Os11g42000.1) | INTRON |