Detailed information of SNP:
|
SNP ID:
sf1124795504(Gbrowse)
Chromosome: chr11 Position: 24795504 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 85.59% | 14.41% |
| All Indica | 796 | 75.25% | 24.75% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 71.93% | 28.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124795504 | G->T | LOC_Os11g42000(LOC_Os11g42000.1) | INTRON |