Detailed information of SNP:
|
SNP ID:
sf1124796957(Gbrowse)
Chromosome: chr11 Position: 24796957 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.63% | 15.37% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 61.77% | 38.23% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 46.57% | 53.43% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124796957 | C->G | INTERGENIC | None |