Detailed information of SNP:
|
SNP ID:
sf1124797350(Gbrowse)
Chromosome: chr11 Position: 24797350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.63% | 25.37% |
| All Indica | 799 | 71.34% | 28.66% |
| All Japonica | 494 | 79.55% | 20.45% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 52.53% | 47.47% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 333 | 73.57% | 26.43% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124797350 | C->T | LOC_Os11g42010(LOC_Os11g42010.1) | Non-Synonymous SNP |