Detailed information of SNP:
|
SNP ID:
sf1124797390(Gbrowse)
Chromosome: chr11 Position: 24797390 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.04% | 24.96% |
| All Indica | 799 | 71.21% | 28.79% |
| All Japonica | 496 | 79.64% | 20.36% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 52.53% | 47.47% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 73.35% | 26.65% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124797390 | C->T | LOC_Os11g42010(LOC_Os11g42010.1) | Synonymous |