Detailed information of SNP:
|
SNP ID:
sf1124797722(Gbrowse)
Chromosome: chr11 Position: 24797722 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.41% | 45.59% |
| All Indica | 799 | 60.83% | 39.17% |
| All Japonica | 496 | 48.19% | 51.81% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 334 | 55.69% | 44.31% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124797722 | A->G | LOC_Os11g42010(LOC_Os11g42010.1) | INTRON |