Detailed information of SNP:



SNP ID: sf1124798297(Gbrowse)

Chromosome: chr11

Position: 24798297
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1383 79.10% 20.90%
All Indica796 98.74% 1.26%
All Japonica465 44.95% 55.05%
Aus67 79.10% 20.90%
Indica I374 99.20% 0.80%
Indica II213 98.12% 1.88%
Indica Intermediate209 98.56% 1.44%
Temperate Japonica317 31.86% 68.14%
Tropical Japonica93 88.17% 11.83%
Japonica Intermediate55 47.27% 52.73%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 78.05% 21.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1124798297 T->C INTERGENIC None