Detailed information of SNP:
|
SNP ID:
sf1124798297(Gbrowse)
Chromosome: chr11 Position: 24798297 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 79.10% | 20.90% |
| All Indica | 796 | 98.74% | 1.26% |
| All Japonica | 465 | 44.95% | 55.05% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 317 | 31.86% | 68.14% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 55 | 47.27% | 52.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124798297 | T->C | INTERGENIC | None |