Detailed information of SNP:
|
SNP ID:
sf1124798321(Gbrowse)
Chromosome: chr11 Position: 24798321 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.51% | 45.49% |
| All Indica | 799 | 60.83% | 39.17% |
| All Japonica | 497 | 48.49% | 51.51% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 40.80% | 59.20% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 55.82% | 44.18% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124798321 | A->G | INTERGENIC | None |