Detailed information of SNP:
|
SNP ID:
sf1124812882(Gbrowse)
Chromosome: chr11 Position: 24812882 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 83.26% | 16.74% |
| All Indica | 795 | 98.24% | 1.76% |
| All Japonica | 494 | 59.92% | 40.08% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 45.21% | 54.79% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124812882 | C->T | INTERGENIC | None |