Detailed information of SNP:
|
SNP ID:
sf1124813146(Gbrowse)
Chromosome: chr11 Position: 24813146 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 82.17% | 17.83% |
| All Indica | 795 | 97.99% | 2.01% |
| All Japonica | 475 | 56.42% | 43.58% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 320 | 41.56% | 58.44% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124813146 | C->T | INTERGENIC | None |