Detailed information of SNP:
|
SNP ID:
sf1124813687(Gbrowse)
Chromosome: chr11 Position: 24813687 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 75.36% | 24.64% |
| All Indica | 785 | 62.04% | 37.96% |
| All Japonica | 494 | 92.31% | 7.69% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 366 | 67.21% | 32.79% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 208 | 43.75% | 56.25% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124813687 | C->T | INTERGENIC | None |