Detailed information of SNP:
|
SNP ID:
sf1124815000(Gbrowse)
Chromosome: chr11 Position: 24815000 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 75.81% | 24.19% |
| All Indica | 773 | 95.34% | 4.66% |
| All Japonica | 491 | 51.32% | 48.68% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 355 | 94.93% | 5.07% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 330 | 36.67% | 63.33% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124815000 | T->G | INTERGENIC | None |