Detailed information of SNP:
|
SNP ID:
sf1124815099(Gbrowse)
Chromosome: chr11 Position: 24815099 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 83.36% | 16.64% |
| All Indica | 797 | 97.87% | 2.13% |
| All Japonica | 493 | 60.65% | 39.35% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 45.65% | 54.35% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124815099 | A->G | INTERGENIC | None |