Detailed information of SNP:
|
SNP ID:
sf1124815418(Gbrowse)
Chromosome: chr11 Position: 24815418 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 83.04% | 16.96% |
| All Indica | 793 | 97.35% | 2.65% |
| All Japonica | 493 | 60.65% | 39.35% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 45.62% | 54.38% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124815418 | T->C | INTERGENIC | None |