Detailed information of SNP:
|
SNP ID:
sf1124831317(Gbrowse)
Chromosome: chr11 Position: 24831317 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 62.38% | 37.62% |
| All Indica | 792 | 76.01% | 23.99% |
| All Japonica | 493 | 42.80% | 57.20% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 369 | 85.09% | 14.91% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 333 | 28.83% | 71.17% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124831317 | A->C | INTERGENIC | None |