Detailed information of SNP:
|
SNP ID:
sf1124841354(Gbrowse)
Chromosome: chr11 Position: 24841354 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 62.66% | 37.34% |
| All Indica | 795 | 75.85% | 24.15% |
| All Japonica | 489 | 43.15% | 56.85% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 372 | 87.37% | 12.63% |
| Indica II | 212 | 49.53% | 50.47% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 332 | 28.61% | 71.39% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124841354 | C->T | INTERGENIC | None |