Detailed information of SNP:
|
SNP ID:
sf1124842322(Gbrowse)
Chromosome: chr11 Position: 24842322 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 58.20% | 41.80% |
| All Indica | 795 | 77.48% | 22.52% |
| All Japonica | 491 | 26.68% | 73.32% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 373 | 86.33% | 13.67% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 64 | 32.81% | 67.19% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124842322 | A->G | INTERGENIC | None |