Detailed information of SNP:
|
SNP ID:
sf1124846471(Gbrowse)
Chromosome: chr11 Position: 24846471 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 51.07% | 48.93% |
| All Indica | 785 | 68.54% | 31.46% |
| All Japonica | 494 | 23.28% | 76.72% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 365 | 71.51% | 28.49% |
| Indica II | 210 | 47.14% | 52.86% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 332 | 10.54% | 89.46% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124846471 | T->A | INTERGENIC | None |